PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678421210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 215aa    MW: 24176.2 Da    PI: 8.6004
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678421210genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.74.9e-323893359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 +++YkeClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR++++ 
    678421210 38 AITYKECLKNHAANIGGNVTDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRKQHHG 93
                 689*************************9.999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-293991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2239102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-304090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5054190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.38E-17136200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-29140201IPR009057Homeodomain-like
TIGRFAMsTIGR015657.4E-29142199IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSESEVKMQS GYNYAAVDNP HEKPRMFSSG DGGKPKTAIT YKECLKNHAA NIGGNVTDGC  60
GEFMPSGEEG TLEALKCAAC NCHRNFHRKQ HHGEMVHPLH IPSHWTQMVQ PVKVVYGGGT  120
DSSSEELNFN HIAPAPPHFV TKKRFRTKFT PGQKEKMQEF AEKLGWRIPR DDDSEIQRFC  180
AEVGVKRQVF KVWMHNNKNT TSSTSASKKT PPEEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-251412041679ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083674.11e-92PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9M9S01e-58ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLS8C3828e-88S8C382_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000095811e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-57homeobox protein 31